Publications

• Galgano, A., Gerber, A.P. (2010) RNA-binding protein immunopurification-microarray (RIP-Chip) analysis to profile localized RNAs. Methods Mol. Biol., in press.

• Eliyahu, E., Pnueli, L., Melamed, D., Scherrer, T., Gerber, A.P., Pines, O., Rapaport, D., Arava Y (2010) Tom20 mediates localization of mRNAs to mitochondria in a translation-dependent manner. Mol. Cell Biol. 30(1): 284-94 (PDF)

• Halbach, A., Zhang, H., Wengi A., Jablonska, Z., Gruber, I.M.L., Halbeisen, R.E., Dehé, P-M., Kemmeren, P, Holstege, F., Géli, V., Gerber, A.P., Dichtl, B. (2009) Cotranslational assembly of the yeast SET1C histone methyltransferase complex. EMBO J. 28: 2959-2970 (PDF)

• San Paolo, S., Vanacova, S., Schenk, L., Scherrer, T., Blank, D., Keller, W., Gerber, A.P. (2009) Distinct roles of non-canonical poly(A) polymerases in RNA metabolism. PLoS Genet. 5(7), e1000555 (PDF)

• Kanitz, A., Gerber, A.P. (2009) Circuitry of mRNA regulation. WIREs Syst. Biol. Med. wsbm. 55, epub 30. Sept. (PDF)
  

• Halbeisen, R.E., Scherrer, T., Gerber, A.P. (2009) Affinity purification of ribosomes to access the translatome. Methods, 48(3), 306-10 (PDF)

• Halbeisen R.E., Gerber A.P. (2009) Stress-dependent coordination of transcriptome and translatome in yeast. PLoS Biol., 7 (5): e105 (PDF)
  

• Hogan, D.J., Riordan, D.P., Gerber, A.P., Herschlag, D., Brown, P.O. (2008) Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol, 6 (10), e255 (PDF)
  
  
• Galgano, A., Forrer, M., Jaskiewicz, L., Kanitz, A., Zavolan, M., Gerber, A.P. (2008) Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS ONE, 3(9): e3164 (PDF)

• Hasegawa, Y., Irie, K., Gerber, A.P. (2008) Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast. RNA, 14, 2333-2347 (PDF)

• Muraro, N.I., Weston, A.J., Gerber, A.P., Luschnig, S., Moffat, K.G., Baines, R.A. (2008) Pumilio binds para mRNA and requires Nanos and Brat to regulate sodium current in Drosophila motoneurons. J. Neurosci. 28, 2099-2109. (PDF)

• Halbeisen, R.E., Galgano, A., Scherrer, T. and Gerber, A.P. (2008) Post-transcriptional gene regulation: From genome-wide studies to principles. Cell. Mol. Life Sci. 65: 798-813 (PDF)

• Gerber, A.P., (2007) Coordination of functionally related mRNAs by RNA-binding proteins. Leading-Edge Messenger RNA Research Communications, M. H. Ostrovskiy, ed. Nova Science Publishers, 79-91
  
  
• Gerber, A.P., Luschnig, S., Krasnow, M., Brown, P.O., Herschlag D. (2006) Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA. 103, 4487-4492   (PDF)
  

• Gerber, A., (2006) Pharmakogenomik im Modell der Hefe. Bioworld. 01, 2-3

• Gerber, A.P., Herschlag, D., Brown, P.O. (2004) Extensive association of functionally and cytotopically related mRNAs with Puf-family RNA-binding proteins in yeast. PLoS Biology,. 2(3), E79.
  
  
• Shepard, K.A., Gerber, A.P., Jambhekar, A., Takizawa, P.A., Brown, P.O., Herschlag, D., DeRisi, J.L., Vale, R.D. (2003) Widespread cytoplasmic mRNA transport in yeast: Identification of 22 bud-localized transcripts using DNA microarray analysis. Proc. Natl. Acad. Sci. USA. 100, 11429-11434.
  
  
• Wolf, J., Gerber A.P., Keller, W. (2002) tadA, an essential tRNA-specific adenosine deaminase from Escherichia coli. EMBO J. 21, 3841-51.
  
  
• Gerber, A.P., Keller W. (2001) RNA editing by base deamination: more enzymes, more targets, new mysteries. Trends Biochem Sci. 26, 376-84.
  
  
• Keegan, L. P., Gerber, A.P., Brindle, J., Leemans, R., Gallo, A., Keller, W., O'Connell. M.A. (2000) The properties of a tRNA-specific adenosine deaminase from Drosophila melanogaster support an evolutionary link between pre-mRNA editing and tRNA modification. Mol. Cell. Biol. 20, 825-833.
  
  
• Paupard, M.-C., O'Connell, M.A., Gerber, A.P., Zukin, R.S. (2000) Patterns of developmental expression of the RNA editing enzyme rADAR2. Neuroscience 95, 869-879.
  
  
• Gerber, A.P., Keller, W. (1999) An adenosine deaminase that generates inosine at the wobble position of tRNAs. Science 286, 1146-1149.
  
  
• Maas, S., Gerber, A.P., Rich, A. (1999) Identification and characterization of a human tRNA-specific adenosine deaminase related to the ADAR family of pre-mRNA editing enzymes. Proc. Natl. Acad. Sci. USA. 96, 8895-8900.
  
  
• Keller, W., Wolf, J., Gerber, A. (1999) Enzymatic formation of inosine in pre-mRNA and tRNA by adenosine deamination. FEBS Lett. 452, 71-76.
  
  
• Gerber, A., Grosjean, H., Melcher, T., Keller, W. (1998) Tad1p, a yeast tRNA-specific adenosine deaminase, is related to the mammalian pre-mRNA editing enzymes ADAR1 and ADAR2. EMBO J. 17, 4780-4789.
  
  
• O'Connell, M.A., Gerber, A., Keegan, L.P. (1998) Purification of native and overexpression of recombinant dsRNA-specific adenosine deaminases. Methods 15, 51-62.
  
  
• Gerber, A., O'Connell, M.A., Keller, W. (1997) Two forms of human double-stranded RNA-specific editase 1 (hRED1) generated by the insertion of an Alu cassette. RNA 3, 453-463.
  
  
• O'Connell, M.A., Gerber, A., Keller, W. (1997) Purification of human double-stranded RNA-specific editase 1 (hRed1) involved in editing of brain glutamate receptor B pre-mRNA. J. Biol. Chem. 272, 473-478